org.biojava.bio.seq.io.agave
Class AGAVETranscriptHandler

java.lang.Object
  extended by org.biojava.bio.seq.io.agave.StAXContentHandlerBase
      extended by org.biojava.bio.seq.io.agave.StAXFeatureHandler
          extended by org.biojava.bio.seq.io.agave.AGAVETranscriptHandler
All Implemented Interfaces:
AGAVEEvidenceCallbackItf, StAXContentHandler

public class AGAVETranscriptHandler
extends StAXFeatureHandler
implements AGAVEEvidenceCallbackItf

transcript

Author:
Hanning Ni Doubletwist Inc

Field Summary
static StAXHandlerFactory AGAVE_TRANSCRIPT_HANDLER_FACTORY
           
 
Fields inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler
annot, callbackStack, endLoc, featureListener, featureTemplate, myLocalName, stackLevel, startLoc, staxenv, subFeatures
 
Method Summary
 void addElementId(String id)
           
 void startElementHandler(String nsURI, String localName, String qName, Attributes attrs)
          Element-specific handler.
 
Methods inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler
addFeatureToSequence, addHandler, createTemplate, endElement, endElementHandler, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, realizeSubFeatures, setFeatureListener, setHandlerCharacteristics, setProperty, startElement
 
Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

AGAVE_TRANSCRIPT_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_TRANSCRIPT_HANDLER_FACTORY
Method Detail

addElementId

public void addElementId(String id)
Specified by:
addElementId in interface AGAVEEvidenceCallbackItf

startElementHandler

public void startElementHandler(String nsURI,
                                String localName,
                                String qName,
                                Attributes attrs)
                         throws SAXException
Description copied from class: StAXFeatureHandler
Element-specific handler. Subclass this to do something useful!

Overrides:
startElementHandler in class StAXFeatureHandler
Throws:
SAXException