Class Bio::RestrictionEnzyme::Fragments
In: lib/bio/util/restriction_enzyme.rb
Parent: Array

Bio::RestrictionEnzyme::Fragments inherits from Array.

Bio::RestrictionEnzyme::Fragments is a container for Fragment objects. It adds the methods primary and complement which returns an Array of all respective strands from it‘s Fragment members in alphabetically sorted order. Note that it will not return duplicate items and does not return the spacing/padding that you would find by accessing the members directly.

Example:

  primary = ['attaca', 'g']
  complement = ['atga', 'cta']

Note: unrelated to Bio::RestrictionEnzyme::Range::SequenceRange::Fragments

Methods

Public Instance methods

[Source]

     # File lib/bio/util/restriction_enzyme.rb, line 219
219:     def complement; strip_and_sort(:complement); end

[Source]

     # File lib/bio/util/restriction_enzyme.rb, line 218
218:     def primary; strip_and_sort(:primary); end

Protected Instance methods

[Source]

     # File lib/bio/util/restriction_enzyme.rb, line 223
223:     def strip_and_sort( sym_strand )
224:       self.map {|uf| uf.send( sym_strand ).tr(' ', '') }.sort
225:     end

[Validate]