Class | Bio::Blast::Report::Hit |
In: |
lib/bio/appl/blast/report.rb
|
Parent: | Object |
accession | -> | target_id |
Compatible method with Bio::Fasta::Report::Hit class. | ||
definition | -> | target_def |
Compatible method with Bio::Fasta::Report::Hit class. | ||
len | -> | target_len |
Compatible method with Bio::Fasta::Report::Hit class. |
accession | [RW] | Accession |
definition | [RW] | Definition line of subject |
hit_id | [RW] | SeqId of subject |
hsps | [R] | Returns an Array of Bio::Blast::Report::Hsp objects. |
len | [RW] | Length of subject |
num | [RW] | Hit number |
query_def | [RW] | Compatible method with Bio::Fasta::Report::Hit class. |
query_id | [RW] | Compatible method with Bio::Fasta::Report::Hit class. |
query_len | [RW] | Compatible method with Bio::Fasta::Report::Hit class. |
Shortcut methods for the best Hsp, some are also compatible with Bio::Fasta::Report::Hit class.
# File lib/bio/appl/blast/report.rb, line 292 292: def evalue; @hsps.first.evalue; end
# File lib/bio/appl/blast/report.rb, line 306 306: def lap_at 307: [ query_start, query_end, target_start, target_end ] 308: end
# File lib/bio/appl/blast/report.rb, line 295 295: def percent_identity; @hsps.first.percent_identity; end