Class | Bio::FastaNumericFormat |
In: |
lib/bio/db/fasta/qual.rb
|
Parent: | FastaFormat |
Treats a FASTA formatted numerical entry, such as:
>id and/or some comments <== comment line 24 15 23 29 20 13 20 21 21 23 22 25 13 <== numerical data 22 17 15 25 27 32 26 32 29 29 25
The precedent ’>’ can be omitted and the trailing ’>’ will be removed automatically.
— Bio::FastaNumericFormat.new(entry)
Stores the comment and the list of the numerical data.
— Bio::FastaNumericFormat#definition
The comment line of the FASTA formatted data.
Returns the n-th element. If out of range, returns nil.
Arguments:
Returns: | (Integer or nil) the value |
# File lib/bio/db/fasta/qual.rb, line 94 94: def [](n) 95: data[n] 96: end
Returns the list of the numerical data (typically the quality score of its corresponding sequence) as an Array.
Returns: | (Array containing Integer) numbers |
# File lib/bio/db/fasta/qual.rb, line 64 64: def data 65: unless defined?(@list) 66: @list = @data.strip.split(/\s+/).map {|x| x.to_i} 67: end 68: @list 69: end