probcons.rb

Path: lib/bio/appl/probcons.rb
Last Update: Thu Feb 18 18:16:45 +0000 2010

bio/appl/probcons.rb - ProbCons application wrapper class

Copyright:Copyright (C) 2006-2007 Jeffrey Blakeslee and John Conery University of Oregon <jeffb@uoregon.edu> Naohisa Goto <ng@bioruby.org>
License:The Ruby License
 $Id: probcons.rb,v 1.1 2007/07/16 12:25:50 ngoto Exp $

Bio::Probcons is a wrapper class to execute ProbCons (Probabilistic Consistency-based Multiple Alignment of Amino Acid Sequences).

References

  • probcons.stanford.edu/
  • Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. ProbCons: Probabilistic Consistency-based Multiple Sequence Alignment. Genome Research 15: 330-340, 2005.

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