Class | Bio::FANTOM::MaXML::Cluster |
In: |
lib/bio/db/fantom.rb
|
Parent: | MaXML |
Data_XPath | = | 'maxml-clusters/cluster' | (MaXML cluster) fantom2.gsc.riken.go.jp/fantom/2.1/allclust.sep.xml.gz |
# File lib/bio/db/fantom.rb, line 145 145: def representative_annotations 146: e = representative_sequence 147: e ? e.annotations : nil 148: end
# File lib/bio/db/fantom.rb, line 150 150: def representative_cloneid 151: e = representative_sequence 152: e ? e.cloneid : nil 153: end
# File lib/bio/db/fantom.rb, line 116 116: def representative_seqid 117: unless defined?(@representative_seqid) 118: @representative_seqid = 119: gsub_entities(@elem.text('representative-seqid')) 120: end 121: @representative_seqid 122: end
# File lib/bio/db/fantom.rb, line 135 135: def representative_sequence 136: unless defined?(@representative_sequence) 137: rid = representative_seqid 138: @representative_sequence = 139: rid ? sequences[representative_seqid] : nil 140: end 141: @representative_sequence 142: end
# File lib/bio/db/fantom.rb, line 131 131: def sequence(idstr = nil) 132: idstr ? sequences[idstr] : representative_sequence 133: end