Class Bio::DDBJ::XML::Gib
In: lib/bio/io/ddbjxml.rb
Parent: XML

Gib

Genome Information broker

Examples

  serv = Bio::DDBJ::XML::Gib.new
  puts serv.getOrganismList
  puts serv.getChIDList
  puts serv.getOrganismNameFromChid('Sent_CT18:')
  puts serv.getChIDFromOrganismName('Aquifex aeolicus VF5')
  puts serv.getAccession('Ecol_K12_MG1655:')
  puts serv.getPieceNumber('Mgen_G37:')
  puts serv.getDivision('Mgen_G37:')
  puts serv.getType('Mgen_G37:')
  puts serv.getCDS('Aaeo_VF5:ece1')
  puts serv.getFlatFile('Nost_PCC7120:pCC7120zeta')
  puts serv.getFastaFile('Nost_PCC7120:pCC7120zeta', 'cdsaa')

WSDL Methods

  • getOrganismList
  • getChIDList
  • getOrganismNameFromChid(chid)
  • getChIDFromOrganismName(orgName)
  • getAccession(chid)
  • getPieceNumber(chid)
  • getDivision(chid)
  • getType(chid)
  • getFlatFile(chid)
  • getFastaFile(chid, type)
  • getCDS(chid)

References

Constants

SERVER_URI = BASE_URI + "Gib.wsdl"

[Validate]