Class Bio::DDBJ::XML::DDBJ
In: lib/bio/io/ddbjxml.rb
Parent: XML

DDBJ

Retrieves a sequence entry from the DDBJ DNA Data Bank Japan.

Examples

  serv = Bio::DDBJ::XML::DDBJ.new
  puts serv.getFFEntry('AB000050')
  puts serv.getXMLEntry('AB000050')
  puts serv.getFeatureInfo('AB000050', 'cds')
  puts serv.getAllFeatures('AB000050')
  puts serv.getRelatedFeatures('AL121903', '59000', '64000')
  puts serv.getRelatedFeaturesSeq('AL121903', '59000', '64000')

WSDL Methods

  • getFFEntry(accession)
  • getXMLEntry(accession)
  • getFeatureInfo(accession, feature)
  • getAllFeatures(accession)
  • getRelatedFeatures(accession, start, stop)
  • getRelatedFeaturesSeq(accession, start, stop)

References

Constants

SERVER_URI = BASE_URI + "DDBJ.wsdl"

[Validate]