Path: | lib/bio/appl/hmmer/report.rb |
Last Update: | Thu Feb 18 18:16:45 +0000 2010 |
Copyright: | Copyright (C) 2002 Hiroshi Suga <suga@biophys.kyoto-u.ac.jp>, |
Copyright: | Copyright (C) 2005 Masashi Fujita <fujita@kuicr.kyoto-u.ac.jp> |
License: | The Ruby License |
$Id:$
Parser class for hmmsearch and hmmpfam in the HMMER package.
#for multiple reports in a single output file (example.hmmpfam) Bio::HMMER.reports(File.read("example.hmmpfam")) do |report| report.program['name'] report.parameter['HMM file'] report.query_info['Query sequence'] report.hits.each do |hit| hit.accession hit.description hit.score hit.evalue hit.hsps.each do |hsp| hsp.accession hsp.domain hsp.evalue hsp.midline end end