Class | Bio::PhyloXML::BinaryCharacters |
In: |
lib/bio/db/phyloxml/phyloxml_elements.rb
|
Parent: | Object |
The names and/or counts of binary characters present, gained, and lost at the root of a clade.
absent | [RW] | |
absent_count | [R] | |
bc_type | [RW] | |
gained | [RW] | |
gained_count | [R] | |
lost | [RW] | |
lost_count | [R] | |
present | [RW] | |
present_count | [R] |
# File lib/bio/db/phyloxml/phyloxml_elements.rb, line 1057 1057: def initialize 1058: @gained = [] 1059: @lost = [] 1060: @present = [] 1061: @absent = [] 1062: end
# File lib/bio/db/phyloxml/phyloxml_elements.rb, line 1053 1053: def absent_count=(str) 1054: @absent_count = str.to_i 1055: end
# File lib/bio/db/phyloxml/phyloxml_elements.rb, line 1041 1041: def gained_count=(str) 1042: @gained_count = str.to_i 1043: end
# File lib/bio/db/phyloxml/phyloxml_elements.rb, line 1045 1045: def lost_count=(str) 1046: @lost_count = str.to_i 1047: end
# File lib/bio/db/phyloxml/phyloxml_elements.rb, line 1049 1049: def present_count=(str) 1050: @present_count = str.to_i 1051: end
Converts elements to xml representation. Called by PhyloXML::Writer class.
# File lib/bio/db/phyloxml/phyloxml_elements.rb, line 1065 1065: def to_xml 1066: bc = LibXML::XML::Node.new('binary_characters') 1067: bc['type'] = @bc_type 1068: PhyloXML::Writer.generate_xml(bc, self, [ 1069: [:attr, 'gained_count'], 1070: [:attr, 'lost_count'], 1071: [:attr, 'present_count'], 1072: [:attr, 'absent_count']]) 1073: 1074: if not @gained.empty? 1075: gained_xml = LibXML::XML::Node.new('gained') 1076: PhyloXML::Writer.generate_xml(gained_xml, self, [[:simplearr, 'bc', @gained]]) 1077: bc << gained_xml 1078: end 1079: 1080: if not @lost.empty? 1081: lost_xml = LibXML::XML::Node.new('lost') 1082: PhyloXML::Writer.generate_xml(lost_xml, self, [[:simplearr, 'bc', @lost]]) 1083: bc << lost_xml 1084: end 1085: 1086: if not @present.empty? 1087: present_xml = LibXML::XML::Node.new('present') 1088: PhyloXML::Writer.generate_xml(present_xml, self, [[:simplearr, 'bc', @present]]) 1089: bc << present_xml 1090: end 1091: 1092: if not @absent.empty? 1093: absent_xml = LibXML::XML::Node.new('absent') 1094: PhyloXML::Writer.generate_xml(absent_xml, self, [[:simplearr, 'bc', @absent]]) 1095: bc << absent_xml 1096: end 1097: 1098: return bc 1099: end