ensembl.rb

Path: lib/bio/io/ensembl.rb
Last Update: Thu Feb 18 18:16:45 +0000 2010

bio/io/ensembl.rb - An Ensembl Genome Browser client.

Copyright:Copyright (C) 2006 Mitsuteru C. Nakao <n@bioruby.org>
License:The Ruby License

$Id:$

Description

Client classes for Ensembl Genome Browser.

Examples

 human = Bio::Ensembl.new('Homo_sapiens')
 seq = human.exportview(1, 1000, 100000)
 gff = human.exportview(1, 1000, 100000, ['gene', 'variation', 'genscan'])

 human = Bio::Ensembl.human
 seq = human.exportview(1, 1000, 100000)
 gff = human.exportview(1, 1000, 100000, ['gene'])

 seq = Bio::Ensembl.human.exportview(1, 1000, 100000)
 gff = Bio::Ensembl.human.exportview(1, 1000, 100000, ['gene', 'variation', 'genscan'])

References

Required files

bio/command  

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