Class | Bio::DDBJ::XML::Blast |
In: |
lib/bio/io/ddbjxml.rb
|
Parent: | XML |
DDBJ XML BLAST Database Search
serv = Bio::DDBJ::XML::Blast.new program = 'blastp' database = 'SWISS' query = "MSSRIARALALVVTLLHLTRLALSTCPAACHCPLEAPKCAPGVGLVRDGCGCCKVCAKQL" report = serv.searchSimple(program, database, query) Bio::Blast::Default::Report.new(report).each_hit do |hit| hit.hsps.find_all {|x| x.evalue < 0.1 }.each do |hsp| p [hsps.evalue, hsps.identity, hsps.definition] end end program = 'tblastn' database = 'ddbjvrl' param = '-m 8 -e 0.001' puts serv.searchParam(program, database, query, param)
Returns a blast report in the default format.
Blasts with param and returns a blast report.
SERVER_URI | = | BASE_URI + "Blast.wsdl" |